Would it be better to reuse the existing gasket since it is in good shape and well seated & formed to the window?
I'm betting that gasket has been there for some time, and if it isn't cracked, it will be brittle enough to begin cracking or separating and you'll be in the middle of re-installing the glass and have to stop and get a new one. Besides, going back with a nice, pliable gasket is the best preventive measure of having to redo a leaking window.
If so will applying pressure,starting at a top corner and working my way across the top of the window get it to brake loose?
Yes
Should I use any silicone or sealant when putting it back in?
Putting silicone on the gasket will allow an easier install. HOWEVER, silicone and sealer don't mix too well. A well-diluted shampoo with water, rubbed on the gasket by hand will work fine.
And when putting the outter trim back on,will it just snap on back in place?... is the tool to remove the trim something NAPA or AutoZone would sell?
You're going to need to apply even pressure on each place the clips are located. Don't be tempted to grab a rubber mallet. To get into a better position, grab a box to stand on so you can press down a tad harder. Before applying the stainless, get a white grease pen or masking tape and mark on the glass where each clip is located so you'll know where to apply pressure. Yes, the window tool should be avail at auto zone.
One last thing: you'll need to buy the correct sealant for the glass install....check with a mustang supplier or your local glass shop. This is the messy part. Once the glass and gasket are in, you'll need to apply ample amounts of sealant between glass and rubber and between the body pinch-weld and gasket.