Pertronix ignition module change does not alter the fact that the coil remains the same and its still a conventional ignition system. In this case the gap does not change from factory specifications.
This situation is changed if the coil is changed or if the coil is triggered by an electronic control box (capacitive discharge ignition system). If the coil is a hotter coil, the gap can be increased modestly (widening it a bit can help with a hotter coil). If CD ignition, the situation is radically changed because a CD ignition can double or triple the voltage at the plugs. In this case, changing them to .045" or even .065" is not a problem as the output of CD ignitions is high enough and strong enough to jump this gap at any rpm.
You want the widest gap possible for the engine to fire reliably at all rpms so here's a guideline:
Conventional .035 is about tops
Hot conventional coil .040 is about tops.
CD ignition box .065 is about tops
If you have one system, don't want to change it and have grey to black plugs on examination, use one heat range hotter plugs (longer thinner center insulator).